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Ok, I’ve done all that you have described:

  1. stop KE9, remove the doc-state-xmlc, startup KE9 - problem still exists
  2. stop KE9, backup profile folder, delete it, startup KE9, it auto created the 9.1 profile folder, but the problem still exists.

Note Komodo inherits settings from earlier versions, it sounds like it is inheriting the problem from an earlier version of Komodo so you’ll want to backup and delete all versioned profile folders.

I moved 9 posts to a new topic: Where is Default color scheme from Komodo 8 in Komodo 9?

Fixed: (moved to another topic as the 70% of the post contains some different questions which are not related to the issue)